geofetch

geofetch is a command-line utility that converts GEO or SRA accessions into PEP projects. You provide an accession (or a spreadsheet with a list of accessions), and geofetch with produce the two components of a PEP: the project config file and the sample annotation file. geofetch will also download the data from SRA, so your project will be ready for direct input into any PEP-compatible tool.

Code and documentation

Quick start

geofetch currently exists only in prototype and is not yet functional or publicly available.


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