geofetch is a command-line utility that converts GEO or SRA accessions into PEP projects. You provide an accession (or a spreadsheet with a list of accessions), and
geofetch with produce the two components of a PEP: the project config file and the sample annotation file.
geofetch will also download the data from SRA, so your project will be ready for direct input into any PEP-compatible tool.
Code and documentation
- User documentation and vignettes pending
- Source code at Github
geofetch currently exists only in prototype and is not yet functional or publicly available.