R package: pepr

pepr is an R package for reading Portable Encapsulated Projects. It will read PEP projects, loading all project and sample metadata into R with a single line of code. pepr is currently in alpha mode and should not be used production projects. It is made available for conceptual and testing purposes only.

Code and documentation

Quick start

Install with

devtools::install_github("pepkit/pepr")

Load up your project like this:

p = pepr::Project(file="project_config.yaml")

Now you can retrieve all your configuration information or sample metadata with easy getter functions:

samples(p)
config(p)

p@config
p@samples


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